STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3520Nephrocystin-3; FOG: TPR repeat. (1121 aa)    
Predicted Functional Partners:
ACPL_1135
Hypothetical protein.
 
     0.738
ACPL_3521
Hypothetical protein.
       0.634
ACPL_4741
Hypothetical protein.
  
     0.627
ACPL_5972
Hypothetical protein; Predicted NTPase (NACHT family).
  
     0.566
ACPL_4729
alpha-L-arabinofuranosidase B catalytic; O-Glycosyl hydrolase.
  
     0.549
ACPL_4742
alpha-L-arabinofuranosidase B catalytic; Endoglucanase.
  
     0.539
ACPL_5020
Pectate lyase.
  
     0.526
ACPL_3212
Hypothetical protein; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.
  
     0.508
asp3.2
Polypeptide N-acetylgalactosaminyltransferase 13; Lysophospholipase L1 and related esterases.
  
     0.508
abfB-2
Arabinofuranosidase.
  
     0.502
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.