Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3530Hypothetical protein. (163 aa)    
Predicted Functional Partners:
ACPL_3531
Hypothetical protein.
 
     0.938
ACPL_3532
Swarming motility protein ybiA; Uncharacterized protein conserved in bacteria.
       0.613
ACPL_3529
Methyl-accepting chemotaxis sensory transducer; Serine phosphatase RsbU, regulator of sigma subunit.
       0.576
ACPL_4320
Hypothetical protein.
  
     0.483
ACPL_3974
Hypothetical protein.
  
     0.447
ACPL_3528
Hypothetical protein.
       0.434
ACPL_3765
Hypothetical protein.
  
     0.420
ACPL_3975
Hypothetical protein.
  
     0.412
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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