ACPL_3581 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_3581

ydaM-like uncharacterized protein; FOG: GGDEF domain. (500 aa)

Predicted Functional Partners:

ACPL_3374

0.818

ACPL_3614

0.814

ACPL_3854

0.814

ACPL_1216

0.812

ACPL_6996

0.792

ACPL_5362

0.785

ACPL_2359

0.780

ACPL_2826

0.773

ACPL_3512

0.773

ACPL_2604

0.772

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ACPL_1216	ACPL_2604	y4lL-like uncharacterized protein; FOG: GGDEF domain.	Cellulose synthesis regulatory protein; Response regulator containing a CheY-like receiver domain and a GGDEF domain.	0.518
ACPL_1216	ACPL_2826	y4lL-like uncharacterized protein; FOG: GGDEF domain.	Putative signaling protein; FOG: GGDEF domain.	0.426
ACPL_1216	ACPL_3374	y4lL-like uncharacterized protein; FOG: GGDEF domain.	Signaling protein ykoW; FOG: GGDEF domain.	0.414
ACPL_1216	ACPL_3512	y4lL-like uncharacterized protein; FOG: GGDEF domain.	Putative signaling protein; FOG: GGDEF domain.	0.412
ACPL_1216	ACPL_3581	y4lL-like uncharacterized protein; FOG: GGDEF domain.	ydaM-like uncharacterized protein; FOG: GGDEF domain.	0.812
ACPL_1216	ACPL_3614	y4lL-like uncharacterized protein; FOG: GGDEF domain.	Putative signaling protein; FOG: GGDEF domain.	0.440
ACPL_1216	ACPL_3854	y4lL-like uncharacterized protein; FOG: GGDEF domain.	y4lL-like uncharacterized protein; FOG: GGDEF domain.	0.442
ACPL_1216	ACPL_5362	y4lL-like uncharacterized protein; FOG: GGDEF domain.	yegE-like uncharacterized protein; FOG: GGDEF domain.	0.404
ACPL_2359	ACPL_2826	Putative signaling protein; FOG: GGDEF domain.	Putative signaling protein; FOG: GGDEF domain.	0.780
ACPL_2359	ACPL_3374	Putative signaling protein; FOG: GGDEF domain.	Signaling protein ykoW; FOG: GGDEF domain.	0.458
ACPL_2359	ACPL_3581	Putative signaling protein; FOG: GGDEF domain.	ydaM-like uncharacterized protein; FOG: GGDEF domain.	0.780
ACPL_2359	ACPL_5362	Putative signaling protein; FOG: GGDEF domain.	yegE-like uncharacterized protein; FOG: GGDEF domain.	0.424
ACPL_2604	ACPL_1216	Cellulose synthesis regulatory protein; Response regulator containing a CheY-like receiver domain and a GGDEF domain.	y4lL-like uncharacterized protein; FOG: GGDEF domain.	0.518
ACPL_2604	ACPL_3374	Cellulose synthesis regulatory protein; Response regulator containing a CheY-like receiver domain and a GGDEF domain.	Signaling protein ykoW; FOG: GGDEF domain.	0.548
ACPL_2604	ACPL_3581	Cellulose synthesis regulatory protein; Response regulator containing a CheY-like receiver domain and a GGDEF domain.	ydaM-like uncharacterized protein; FOG: GGDEF domain.	0.772
ACPL_2604	ACPL_3614	Cellulose synthesis regulatory protein; Response regulator containing a CheY-like receiver domain and a GGDEF domain.	Putative signaling protein; FOG: GGDEF domain.	0.506
ACPL_2604	ACPL_3854	Cellulose synthesis regulatory protein; Response regulator containing a CheY-like receiver domain and a GGDEF domain.	y4lL-like uncharacterized protein; FOG: GGDEF domain.	0.503
ACPL_2604	ACPL_5362	Cellulose synthesis regulatory protein; Response regulator containing a CheY-like receiver domain and a GGDEF domain.	yegE-like uncharacterized protein; FOG: GGDEF domain.	0.444
ACPL_2826	ACPL_1216	Putative signaling protein; FOG: GGDEF domain.	y4lL-like uncharacterized protein; FOG: GGDEF domain.	0.426
ACPL_2826	ACPL_2359	Putative signaling protein; FOG: GGDEF domain.	Putative signaling protein; FOG: GGDEF domain.	0.780