STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3590Similar to mitochondrial Short-chain specific acyl-CoA dehydrogenase; Acyl-CoA dehydrogenases. (402 aa)    
Predicted Functional Partners:
fadB
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase.
  
 0.870
fadB-2
3-hydroxyacyl-CoA dehydrogenase.
  
 0.870
ACPL_3589
Radical SAM domain protein; Fe-S oxidoreductase.
 
     0.795
ACPL_3592
Carbamoyl-phosphate synthase large chain; Biotin carboxylase.
 
     0.791
ACPL_3587
Hypothetical protein.
   
   0.777
ACPL_3594
Glycine/D-amino acid oxidases (deaminating).
 
  
  0.776
ACPL_2436
Enoyl-CoA hydratase/carnithine racemase.
  
 0.774
ACPL_3586
FAD linked oxidase domain protein; FAD/FMN-containing dehydrogenases.
   
   0.772
ACPL_3588
Hypothetical protein; Mannose-6-phosphate isomerase.
       0.768
ACPL_5530
Acyl dehydratase.
 
 0.747
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.