ACPL_3608 protein (Actinoplanes sp. SE50110)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ACPL_3608

Hypothetical protein. (164 aa)

Predicted Functional Partners:

ACPL_1153

0.852

otsA

0.553

otsA-2

0.553

otsA-3

0.553

otsA-4

0.553

katE

0.533

ACPL_1735

0.521

ACPL_1906

0.511

ACPL_2435

0.506

ACPL_4536

0.487

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_1153	ACPL_3608	ACPL_1153	ACPL_3608	ygjK-like uncharacterized protein; Neutral trehalase.	Hypothetical protein.	0.852
ACPL_1153	katE	ACPL_1153	ACPL_3139	ygjK-like uncharacterized protein; Neutral trehalase.	Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.	0.724
ACPL_1735	ACPL_3608	ACPL_1735	ACPL_3608	Predicted transcriptional regulators.	Hypothetical protein.	0.521
ACPL_1906	ACPL_3608	ACPL_1906	ACPL_3608	Cu/Zn superoxide dismutase.	Hypothetical protein.	0.511
ACPL_1906	katE	ACPL_1906	ACPL_3139	Cu/Zn superoxide dismutase.	Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.	0.812
ACPL_2435	ACPL_3608	ACPL_2435	ACPL_3608	Predicted transcriptional regulators.	Hypothetical protein.	0.506
ACPL_3608	ACPL_1153	ACPL_3608	ACPL_1153	Hypothetical protein.	ygjK-like uncharacterized protein; Neutral trehalase.	0.852
ACPL_3608	ACPL_1735	ACPL_3608	ACPL_1735	Hypothetical protein.	Predicted transcriptional regulators.	0.521
ACPL_3608	ACPL_1906	ACPL_3608	ACPL_1906	Hypothetical protein.	Cu/Zn superoxide dismutase.	0.511
ACPL_3608	ACPL_2435	ACPL_3608	ACPL_2435	Hypothetical protein.	Predicted transcriptional regulators.	0.506
ACPL_3608	ACPL_4536	ACPL_3608	ACPL_4536	Hypothetical protein.	yhcZ-like uncharacterized transcriptional regulatory protein; ATP-dependent transcriptional regulator.	0.487
ACPL_3608	katE	ACPL_3608	ACPL_3139	Hypothetical protein.	Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.	0.533
ACPL_3608	otsA	ACPL_3608	ACPL_1307	Hypothetical protein.	Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Trehalose-6-phosphate synthase.	0.553
ACPL_3608	otsA-2	ACPL_3608	ACPL_1678	Hypothetical protein.	Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Trehalose-6-phosphate synthase.	0.553
ACPL_3608	otsA-3	ACPL_3608	ACPL_2177	Hypothetical protein.	Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Trehalose-6-phosphate synthase.	0.553
ACPL_3608	otsA-4	ACPL_3608	ACPL_3417	Hypothetical protein.	Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Trehalose-6-phosphate synthase.	0.553
ACPL_4536	ACPL_3608	ACPL_4536	ACPL_3608	yhcZ-like uncharacterized transcriptional regulatory protein; ATP-dependent transcriptional regulator.	Hypothetical protein.	0.487
katE	ACPL_1153	ACPL_3139	ACPL_1153	Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.	ygjK-like uncharacterized protein; Neutral trehalase.	0.724
katE	ACPL_1906	ACPL_3139	ACPL_1906	Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.	Cu/Zn superoxide dismutase.	0.812
katE	ACPL_3608	ACPL_3139	ACPL_3608	Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.	Hypothetical protein.	0.533