Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
acbHABC transporter galactose binding protein. (433 aa)    
Predicted Functional Partners:
acbF
ABC transporter membrane protein.
 
  0.997
acbG
ABC transporter membrane protein.
 
 0.972
msmK
Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
  
 0.827
msiK
Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
  
 0.827
malF
ABC-type sugar transport systems, permease components.
  
  0.811
uspC
uspC-like extracellular binding protein; ABC-type sugar transport system, periplasmic component.
  
  
 0.790
ACPL_8069
Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
   
 
 0.703
ACPL_882
Peptide/nickel transport system substrate-binding protein; ABC-type dipeptide transport system, periplasmic component.
   
 
 0.694
pstS
Phosphate-binding protein pstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.
     
 0.691
ACPL_4619
yurO-like uncharacterized ABC transporter extracellular-binding protein; ABC-type sugar transport system, periplasmic component.
  
  
 0.685
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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