STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galCGalactosylceramidase; O-Glycosyl hydrolase. (785 aa)    
Predicted Functional Partners:
asp3.2
Polypeptide N-acetylgalactosaminyltransferase 13; Lysophospholipase L1 and related esterases.
 
    
0.783
celA
Endoglucanase.
 
   
 0.740
ACPL_5567
ADP-ribose 1''-phosphate phosphatase; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1.
  
     0.678
g7c
Protein G7c.
  
     0.677
ACPL_6150
FAD dependent oxidoreductase; Dehydrogenases (flavoproteins).
  
     0.566
ACPL_6437
Hypothetical protein.
  
     0.528
ACPL_1260
GTP pyrophosphokinase; Guanosine polyphosphate pyrophosphohydrolases/synthetases.
  
     0.523
ACPL_2000
Triple functional domain protein; Myosin heavy chain.
  
     0.482
acbG
ABC transporter membrane protein.
       0.461
acbF
ABC transporter membrane protein.
       0.461
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.