STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3723Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components. (290 aa)    
Predicted Functional Partners:
ACPL_3724
Hypothetical protein.
       0.789
rbp3
Retinol-binding protein 3; Periplasmic protease.
       0.551
ramA
Lipid A export ATP-binding/permease protein msbA; ABC-type multidrug transport system, ATPase and permease components.
  
  0.511
ACPL_3721
Hypothetical protein.
       0.496
rpsK
Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.492
ramB
ABC transporter related protein; ABC-type multidrug transport system, ATPase and permease components.
  
  0.468
ACPL_323
Hypothetical protein; ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
 
 0.457
ACPL_5171
Transitional endoplasmic reticulum ATPase; ATPases of the AAA+ class.
  
   0.453
ACPL_853
Lipid A export ATP-binding/permease protein msbA; ABC-type multidrug transport system, ATPase and permease components.
  
  0.453
ACPL_5010
Similar to mitochondrial Iron-sulfur clusters transporter atm-1; ABC-type oligopeptide transport system, ATPase component.
  
     0.445
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.