STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3737DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (262 aa)    
Predicted Functional Partners:
ACPL_3738
Hypothetical protein.
       0.787
ACPL_3739
Beta-lactamase class C and other penicillin binding proteins.
  
    0.536
ACPL_5035
Conserved repeat domain protein.
  
 
 0.531
ACPL_5213
Uncharacterized protein conserved in bacteria.
  
     0.477
ACPL_6896
RNA polymerase sigma-70 factor, ECF subfamily; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
   
 0.443
ACPL_6876
Hypothetical protein.
  
     0.429
ACPL_3736
Cellulose-binding family II protein.
       0.416
ACPL_4555
Hypothetical protein.
 
 
 0.409
tcmR-6
Transcriptional regulator.
  
     0.404
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.