STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3746Strictosidine synthase; Gluconolactonase. (337 aa)    
Predicted Functional Partners:
ACPL_3743
Membrane protein ydfJ; Predicted drug exporters of the RND superfamily.
       0.714
ACPL_3744
yhgE-like uncharacterized protein; Predicted membrane protein.
       0.714
ACPL_3745
Hypothetical protein.
       0.714
ACPL_3741
Transcriptional regulatory protein yycF; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.641
phoR-4
Two-component system, OmpR family, sensor kinase; Signal transduction histidine kinase.
       0.641
ACPL_5524
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; Predicted flavoprotein involved in K+ transport.
 
    0.535
rbsC
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
      0.517
ACPL_6759
Transcriptional regulator.
  
     0.508
ACPL_4462
Phosphoglycerate mutase 1.
 
  
 0.479
ACPL_3740
Hypothetical protein.
       0.448
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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