Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3752Hypothetical protein. (535 aa)    
Predicted Functional Partners:
ACPL_3755
Hypothetical protein.
  
  
 0.828
ACPL_3750
Hypothetical protein; Nitroreductase.
  
  
 0.805
ACPL_3754
Lantibiotic dehydratase domain protein.
  
  
 0.796
ACPL_3751
Hypothetical protein; Nitroreductase.
       0.792
ACPL_3753
ycaO-like uncharacterized protein.
       0.781
ACPL_3749
Hypothetical protein.
     
 0.638
ACPL_3748
Uncharacterized protein.
       0.588
ACPL_2829
Abortive infection protein; Predicted metal-dependent membrane protease.
  
  
 0.451
ACPL_3178
Abortive infection protein; Predicted metal-dependent membrane protease.
  
  
 0.451
ACPL_3236
Hypothetical protein; Predicted metal-dependent membrane protease.
  
  
 0.451
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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