Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACPL_3785Transcriptional regulators. (293 aa)    
Predicted Functional Partners:
ACPL_3784
Membrane-bound lytic murein transglycosylase F; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.550
ACPL_3787
Cyanophycinase and related exopeptidases.
       0.534
cphB
Cyanophycinase domain protein; Cyanophycinase and related exopeptidases.
       0.523
atrC-2
Polar amino acid transport system ATP-binding protein; ABC-type sugar transport systems, ATPase components.
  
    0.456
cpg2
Glutamate carboxypeptidase; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
       0.450
ACPL_3783
Inner membrane amino-acid ABC transporter permease protein yecS; ABC-type amino acid transport system, permease component.
  
    0.444
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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