ACPL_3858 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_3858

Response regulator containing a CheY-like receiver domain and a GGDEF domain. (530 aa)

Predicted Functional Partners:

ACPL_3859

0.800

ACPL_4813

0.777

rpgR

0.773

ACPL_3857

0.773

ACPL_3239

0.697

ACPL_1150

0.687

ACPL_985

0.672

ACPL_5601

0.639

ACPL_6398

0.626

ACPL_3860

0.601

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_1150	ACPL_3239	ACPL_1150	ACPL_3239	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.470
ACPL_1150	ACPL_3858	ACPL_1150	ACPL_3858	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Response regulator containing a CheY-like receiver domain and a GGDEF domain.	0.687
ACPL_1150	ACPL_4813	ACPL_1150	ACPL_4813	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Putative signaling protein; FOG: EAL domain.	0.783
ACPL_1150	ACPL_5601	ACPL_1150	ACPL_5601	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Signaling protein ykoW; Predicted signal transduction protein containing sensor and EAL domains.	0.651
ACPL_1150	ACPL_6398	ACPL_1150	ACPL_6398	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Putative signaling protein; FOG: EAL domain.	0.455
ACPL_1150	ACPL_985	ACPL_1150	ACPL_985	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.662
ACPL_3239	ACPL_1150	ACPL_3239	ACPL_1150	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.470
ACPL_3239	ACPL_3858	ACPL_3239	ACPL_3858	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Response regulator containing a CheY-like receiver domain and a GGDEF domain.	0.697
ACPL_3239	ACPL_985	ACPL_3239	ACPL_985	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.423
ACPL_3857	ACPL_3858	ACPL_3857	ACPL_3858	Hypothetical protein.	Response regulator containing a CheY-like receiver domain and a GGDEF domain.	0.773
ACPL_3857	ACPL_3859	ACPL_3857	ACPL_3859	Hypothetical protein.	Hypothetical protein; Transcription-repair coupling factor (superfamily II helicase).	0.773
ACPL_3857	ACPL_3860	ACPL_3857	ACPL_3860	Hypothetical protein.	Hypothetical protein.	0.601
ACPL_3857	rpgR	ACPL_3857	ACPL_3856	Hypothetical protein.	X-linked retinitis pigmentosa GTPase regulator; Alpha-tubulin suppressor and related RCC1 domain-containing proteins.	0.775
ACPL_3858	ACPL_1150	ACPL_3858	ACPL_1150	Response regulator containing a CheY-like receiver domain and a GGDEF domain.	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.687
ACPL_3858	ACPL_3239	ACPL_3858	ACPL_3239	Response regulator containing a CheY-like receiver domain and a GGDEF domain.	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.697
ACPL_3858	ACPL_3857	ACPL_3858	ACPL_3857	Response regulator containing a CheY-like receiver domain and a GGDEF domain.	Hypothetical protein.	0.773
ACPL_3858	ACPL_3859	ACPL_3858	ACPL_3859	Response regulator containing a CheY-like receiver domain and a GGDEF domain.	Hypothetical protein; Transcription-repair coupling factor (superfamily II helicase).	0.800
ACPL_3858	ACPL_3860	ACPL_3858	ACPL_3860	Response regulator containing a CheY-like receiver domain and a GGDEF domain.	Hypothetical protein.	0.601
ACPL_3858	ACPL_4813	ACPL_3858	ACPL_4813	Response regulator containing a CheY-like receiver domain and a GGDEF domain.	Putative signaling protein; FOG: EAL domain.	0.777
ACPL_3858	ACPL_5601	ACPL_3858	ACPL_5601	Response regulator containing a CheY-like receiver domain and a GGDEF domain.	Signaling protein ykoW; Predicted signal transduction protein containing sensor and EAL domains.	0.639