STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3859Hypothetical protein; Transcription-repair coupling factor (superfamily II helicase). (376 aa)    
Predicted Functional Partners:
rpgR
X-linked retinitis pigmentosa GTPase regulator; Alpha-tubulin suppressor and related RCC1 domain-containing proteins.
 
     0.802
ACPL_3858
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
     0.800
ACPL_3857
Hypothetical protein.
       0.773
ACPL_1100
Laminin subunit beta-2.
  
     0.633
ACPL_3860
Hypothetical protein.
       0.601
ACPL_3861
Signal peptidase I.
 
     0.481
ACPL_3127
Protein tolB; Periplasmic component of the Tol biopolymer transport system.
  
     0.449
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.