ACPL_3905 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_3905

Hypothetical protein. (820 aa)

Predicted Functional Partners:

ACPL_1619

0.482

ACPL_3209

0.482

ACPL_3370

0.482

sprU

0.482

ACPL_3904

0.470

rnr

0.429

rph

0.406

ACPL_7089

0.406

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_1619	ACPL_3905	ACPL_1619	ACPL_3905	Hypothetical protein.	Hypothetical protein.	0.482
ACPL_3209	ACPL_3905	ACPL_3209	ACPL_3905	Thrombin-like enzyme gussurobin; Secreted trypsin-like serine protease.	Hypothetical protein.	0.482
ACPL_3209	sprU	ACPL_3209	ACPL_7706	Thrombin-like enzyme gussurobin; Secreted trypsin-like serine protease.	Anionic trypsin-2; Secreted trypsin-like serine protease.	0.659
ACPL_3370	ACPL_3905	ACPL_3370	ACPL_3905	Thrombin-like enzyme gussurobin; Secreted trypsin-like serine protease.	Hypothetical protein.	0.482
ACPL_3370	sprU	ACPL_3370	ACPL_7706	Thrombin-like enzyme gussurobin; Secreted trypsin-like serine protease.	Anionic trypsin-2; Secreted trypsin-like serine protease.	0.574
ACPL_3904	ACPL_3905	ACPL_3904	ACPL_3905	Hypothetical protein.	Hypothetical protein.	0.470
ACPL_3905	ACPL_1619	ACPL_3905	ACPL_1619	Hypothetical protein.	Hypothetical protein.	0.482
ACPL_3905	ACPL_3209	ACPL_3905	ACPL_3209	Hypothetical protein.	Thrombin-like enzyme gussurobin; Secreted trypsin-like serine protease.	0.482
ACPL_3905	ACPL_3370	ACPL_3905	ACPL_3370	Hypothetical protein.	Thrombin-like enzyme gussurobin; Secreted trypsin-like serine protease.	0.482
ACPL_3905	ACPL_3904	ACPL_3905	ACPL_3904	Hypothetical protein.	Hypothetical protein.	0.470
ACPL_3905	ACPL_7089	ACPL_3905	ACPL_7089	Hypothetical protein.	Ribonuclease D.	0.406
ACPL_3905	rnr	ACPL_3905	ACPL_1561	Hypothetical protein.	Exoribonuclease R.	0.429
ACPL_3905	rph	ACPL_3905	ACPL_1171	Hypothetical protein.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.406
ACPL_3905	sprU	ACPL_3905	ACPL_7706	Hypothetical protein.	Anionic trypsin-2; Secreted trypsin-like serine protease.	0.482
ACPL_7089	ACPL_3905	ACPL_7089	ACPL_3905	Ribonuclease D.	Hypothetical protein.	0.406
ACPL_7089	rnr	ACPL_7089	ACPL_1561	Ribonuclease D.	Exoribonuclease R.	0.980
ACPL_7089	rph	ACPL_7089	ACPL_1171	Ribonuclease D.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.959
rnr	ACPL_3905	ACPL_1561	ACPL_3905	Exoribonuclease R.	Hypothetical protein.	0.429
rnr	ACPL_7089	ACPL_1561	ACPL_7089	Exoribonuclease R.	Ribonuclease D.	0.980
rnr	rph	ACPL_1561	ACPL_1171	Exoribonuclease R.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.978