Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kdgR-2Pectin degradation repressor protein kdgR; Transcriptional regulator. (259 aa)    
Predicted Functional Partners:
lamA
Biotin carboxylase.
  
  
 0.888
allR-2
HTH-type transcriptional repressor allR; Transcriptional regulator.
  
     0.747
ssfR
Acetate operon repressor; Transcriptional regulator.
  
     0.669
glpK-3
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
     
 0.664
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
     
 0.575
glpD-2
Glycerol-3-phosphate dehydrogenase.
     
 0.528
kipI
Allophanate hydrolase subunit 1.
  
    0.524
kipA
Allophanate hydrolase subunit 2.
  
    0.509
dgoR
Fatty acid metabolism regulator protein; Transcriptional regulators.
  
  
 0.486
ACPL_4171
Fatty acid metabolism regulator protein; Transcriptional regulators.
  
  
 0.453
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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