STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_400Pectate lyase; Alpha-L-arabinofuranosidase. (488 aa)    
Predicted Functional Partners:
ACPL_5020
Pectate lyase.
  
 0.975
pel
Pectate lyase/Amb allergen; Pectate lyase.
  
  
 0.972
ACPL_2701
Pectate lyase.
 
  
 0.949
ACPL_5019
Pectinesterase; Pectin methylesterase.
  
  
 0.943
ACPL_5719
Pectinesterase; Pectin methylesterase.
  
  
 0.941
ybhC
Putative pectinesterase; Pectin methylesterase.
  
  
 0.921
pelX
Pectate lyase/Amb allergen; Subtilisin-like serine proteases.
  
 
0.917
ACPL_6763
PHB depolymerase family esterase; Poly(3-hydroxybutyrate) depolymerase.
 
   0.821
ACPL_401
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.790
ACPL_402
Hypothetical protein.
       0.787
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.