STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcmR-3Transcriptional regulator. (207 aa)    
Predicted Functional Partners:
nah
Kynurenine 3-monooxygenase; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
     0.747
tcmR-5
Transcriptional regulator.
  
     0.635
csn
Chitosanase; Aids in the defense against invading fungal pathogens by degrading their cell wall chitosan.
  
     0.588
ACPL_4060
Hypothetical protein.
       0.553
tetR-12
Tetracycline repressor protein class G; Transcriptional regulator.
  
     0.473
ACPL_430
Leucine rich repeat variant; Predicted NTPase (NACHT family).
  
     0.450
ACPL_6375
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
 
   0.450
tetR-8
Tetracycline repressor protein class C; Transcriptional regulator.
  
     0.445
ACPL_5597
Transcriptional regulator.
  
     0.445
tetR-6
Tetracycline repressor protein class H; Transcriptional regulator.
  
     0.442
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.