STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4081ywbI-like uncharacterized HTH-type transcriptional regulator; Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (294 aa)    
Predicted Functional Partners:
ACPL_3210
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.750
ACPL_4289
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.736
ACPL_4227
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.676
ACPL_6214
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.672
ACPL_5474
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.590
ACPL_4079
Succinate-semialdehyde dehydrogenase (NADP+); NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
       0.565
gabT-2
4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.565
ACPL_4082
Hypothetical protein.
       0.523
gltB
Glutamate synthase domain 2.
     
 0.503
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.410
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.