STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4087Uncharacterized protein; Putative translation initiation inhibitor, yjgF family. (127 aa)    
Predicted Functional Partners:
ACPL_6511
Uncharacterized protein; Putative translation initiation inhibitor, yjgF family.
  
     0.772
ACPL_7456
Uncharacterized protein; Putative translation initiation inhibitor, yjgF family.
  
     0.670
ACPL_4084
Hypothetical protein.
       0.610
ACPL_4085
Lipoprotein-releasing system ATP-binding protein; ABC-type spermidine/putrescine transport systems, ATPase components.
       0.610
macB
Macrolide export ATP-binding/permease protein macB; ABC-type antimicrobial peptide transport system, permease component.
       0.610
tdcB
Threonine dehydratase.
 
 
 0.597
ilvA
Threonine dehydratase.
 
 
 0.513
ACPL_4083
Hypothetical protein.
       0.459
ACPL_966
Threonine dehydratase.
 
 
 0.454
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
 
 0.423
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.