STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4097Urease operon transcriptional activator; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (245 aa)    
Predicted Functional Partners:
ACPL_4096
Hypothetical protein.
 
     0.700
ACPL_4788
Predicted transcriptional regulator.
  
     0.528
ACPL_4095
Serine phosphatase RsbU, regulator of sigma subunit.
       0.527
ACPL_1241
yobV-like uncharacterized HTH-type transcriptional regulator; Predicted transcriptional regulator.
  
     0.493
ACPL_3828
yuxN-like uncharacterized HTH-type transcriptional regulator; Transcriptional regulator.
  
     0.467
nrps1A
Amino acid adenylation domain-containing protein; Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.435
nrps1B
Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.435
ACPL_6818
Fatty acid metabolism regulator protein; Transcriptional regulator.
  
  
 0.434
baeN
Thiotemplate mechanism natural product synthetase; Non-ribosomal peptide synthetase modules and related proteins.
     
 0.426
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.404
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.