Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ocd-2Predicted ornithine cyclodeaminase, mu-crystallin homolog. (320 aa)    
Predicted Functional Partners:
ACPL_4122
Cysteine synthase.
  
  
 0.837
ACPL_4372
Predicted ornithine cyclodeaminase, mu-crystallin homolog.
  
   
 0.778
baeN
Thiotemplate mechanism natural product synthetase; Non-ribosomal peptide synthetase modules and related proteins.
 
   
 0.655
nrps1B
Non-ribosomal peptide synthetase modules and related proteins.
 
   
 0.654
nrps1A
Amino acid adenylation domain-containing protein; Non-ribosomal peptide synthetase modules and related proteins.
 
   
 0.640
ACPL_4123
Non-ribosomal peptide synthetase modules and related proteins.
 
     0.590
putA
NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
  
  
 0.479
ACPL_4120
peptidyl-Lys metalloendopeptidase.
       0.467
ACPL_1000
Cysteine synthase.
 
  
 0.440
tycC
Non-ribosomal peptide synthetase modules and related proteins.
 
   
 0.430
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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