STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degU-2Transcriptional regulatory protein degU; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (199 aa)    
Predicted Functional Partners:
ACPL_6206
Signal transduction histidine kinase.
  
 
 0.680
ACPL_4137
Transcriptional regulator, LuxR family; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
    
0.668
ACPL_6730
Signal transduction histidine kinase.
 
 
 0.666
ACPL_4240
Signal transduction histidine kinase.
  
 
 0.650
ACPL_2318
Signal transduction histidine kinase.
  
 
 0.646
barA
Sensory box histidine kinase/response regulator; Signal transduction histidine kinase.
   
 
 0.645
ACPL_7237
Signal transduction histidine kinase.
  
 
 0.643
ACPL_3850
Nitrate/nitrite sensor protein narQ; Signal transduction histidine kinase.
  
 
 0.640
ACPL_5666
Signal transduction histidine kinase.
  
 
 0.635
ACPL_4132
Hypothetical protein.
 
     0.629
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.