STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4156Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (216 aa)    
Predicted Functional Partners:
ACPL_4155
GAF sensor signal transduction histidine kinase; FOG: GAF domain.
 
 
 0.918
ACPL_3850
Nitrate/nitrite sensor protein narQ; Signal transduction histidine kinase.
  
 
 0.776
ACPL_1671
ATPase domain-containing protein; Signal transduction histidine kinase.
  
 
 0.768
ACPL_6884
Signal transduction histidine kinase.
  
 
 0.768
ACPL_6206
Signal transduction histidine kinase.
 
 
 0.764
ACPL_2515
Two-component system sensor kinase; Signal transduction histidine kinase.
 
 
 0.760
ACPL_4240
Signal transduction histidine kinase.
  
 
 0.758
ACPL_6869
Signal transduction histidine kinase.
  
 
 0.753
ACPL_4563
Signal transduction histidine kinase.
 
 
 0.712
ACPL_1209
Signal transduction histidine kinase.
 
 
 0.709
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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