Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4227Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (332 aa)    
Predicted Functional Partners:
metR
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.762
ACPL_2756
ywbI-like uncharacterized HTH-type transcriptional regulator; Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.734
ACPL_6214
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.714
ACPL_3892
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.690
ACPL_4081
ywbI-like uncharacterized HTH-type transcriptional regulator; Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.676
ACPL_4955
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.527
gltB
Glutamate synthase domain 2.
     
 0.503
ACPL_4226
Hypothetical protein.
       0.479
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.410
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.401
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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