STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4228yvdT-like uncharacterized HTH-type transcriptional regulator; Transcriptional regulator. (190 aa)    
Predicted Functional Partners:
ACPL_1992
NAD-dependent epimerase/dehydratase; Nucleoside-diphosphate-sugar epimerases.
 
     0.736
ACPL_4229
Short-chain dehydrogenase/reductase SDR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.619
ACPL_4579
Glyoxalase/bleomycin resistance protein/dioxygenase; Lactoylglutathione lyase and related lyases.
  
     0.568
tcmR-5
Transcriptional regulator.
  
     0.535
tcmR-6
Transcriptional regulator.
  
     0.517
ACPL_7239
Putative DNA-binding protein; Predicted transcriptional regulators.
  
     0.468
ACPL_4717
DNA-binding protein.
  
     0.465
ACPL_8159
Transcriptional regulator.
  
     0.444
ACPL_7632
Chromosome initiation inhibitor; Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
   0.412
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.