Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACPL_4303 | ACPL_5560 | ACPL_4303 | ACPL_5560 | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | Lipid A export ATP-binding/permease protein msbA; ABC-type multidrug transport system, ATPase and permease components. | 0.644 |
| ACPL_4303 | rplC | ACPL_4303 | ACPL_782 | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.637 |
| ACPL_4303 | rplM | ACPL_4303 | ACPL_833 | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.645 |
| ACPL_4303 | rplU | ACPL_4303 | ACPL_1376 | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.645 |
| ACPL_4303 | rpmC | ACPL_4303 | ACPL_790 | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | Large subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.662 |
| ACPL_4303 | rpsC | ACPL_4303 | ACPL_788 | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.639 |
| ACPL_4303 | rpsE | ACPL_4303 | ACPL_799 | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.661 |
| ACPL_4303 | rpsO | ACPL_4303 | ACPL_7205 | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.654 |
| ACPL_4303 | selB | ACPL_4303 | ACPL_5745 | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | Selenocysteine-specific translation elongation factor. | 0.685 |
| ACPL_4303 | xerD | ACPL_4303 | ACPL_4304 | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | Tyrosine recombinase xerC; Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | 0.785 |
| ACPL_5560 | ACPL_4303 | ACPL_5560 | ACPL_4303 | Lipid A export ATP-binding/permease protein msbA; ABC-type multidrug transport system, ATPase and permease components. | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | 0.644 |
| rplC | ACPL_4303 | ACPL_782 | ACPL_4303 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | 0.637 |
| rplC | rplM | ACPL_782 | ACPL_833 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplC | rplU | ACPL_782 | ACPL_1376 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.988 |
| rplC | rpmC | ACPL_782 | ACPL_790 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Large subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.998 |
| rplC | rpsC | ACPL_782 | ACPL_788 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.998 |
| rplC | rpsE | ACPL_782 | ACPL_799 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.998 |
| rplC | rpsO | ACPL_782 | ACPL_7205 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.993 |
| rplC | selB | ACPL_782 | ACPL_5745 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Selenocysteine-specific translation elongation factor. | 0.947 |
| rplM | ACPL_4303 | ACPL_833 | ACPL_4303 | Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribose import ATP-binding protein rbsA; ATPase components of various ABC-type transport systems, contain duplicated ATPase. | 0.645 |
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