Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACPL_4334Regulatory protein LuxR. (175 aa)    
Predicted Functional Partners:
ACPL_4335
Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.817
ACPL_4333
Hypothetical protein.
       0.613
ACPL_4336
Hypothetical protein; Predicted GTPases (dynamin-related).
       0.569
ACPL_4337
Hypothetical protein; Translation elongation factors (GTPases).
       0.556
ACPL_4338
Hypothetical protein.
       0.524
ACPL_4332
Hypothetical protein.
       0.471
ACPL_4339
MFS transporter, UMF1 family; Permeases of the major facilitator superfamily.
       0.410
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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