Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4336Hypothetical protein; Predicted GTPases (dynamin-related). (497 aa)    
Predicted Functional Partners:
ACPL_4337
Hypothetical protein; Translation elongation factors (GTPases).
 
     0.958
ACPL_4335
Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
     0.857
ACPL_4338
Hypothetical protein.
       0.844
ACPL_2589
Heat shock cognate 71 kDa protein; Molecular chaperone.
 
   
 0.783
ACPL_7402
Heat shock protein 70; Molecular chaperone.
 
   
 0.764
rpsG
Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
    
 0.748
ACPL_1603
Otogelin.
  
     0.747
ACPL_1602
Hypothetical protein.
  
     0.741
ACPL_5759
Hypothetical protein.
 
     0.727
ACPL_8081
Hypothetical protein.
  
     0.726
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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