Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACPL_4354Endonuclease/exonuclease/phosphatase; Exonuclease III. (256 aa)    
Predicted Functional Partners:
ACPL_4352
yfcA-like uncharacterized transmembrane protein; Predicted permeases.
       0.550
ACPL_4351
Uncharacterized protein; Belongs to the UPF0303 family.
       0.538
ACPL_1265
Hypothetical protein.
 
     0.502
ACPL_4350
Uncharacterized protein; Nucleoside-diphosphate-sugar epimerases.
 
     0.502
ACPL_7994
Hypothetical protein.
  
     0.484
ACPL_8069
Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
  
    0.449
cefD
Aminotransferase class V; Selenocysteine lyase.
  
 
   0.406
ACPL_1710
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; Phosphatidylglycerophosphate synthase.
  
     0.404
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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