STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4367tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; Predicted oxidoreductase. (556 aa)    
Predicted Functional Partners:
ACPL_4368
Hypothetical protein; Siderophore synthetase component.
       0.571
ACPL_4369
RhbF-like rhizobactin siderophore biosynthesis protein; Siderophore synthetase component.
       0.565
lysA
Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
       0.565
ACPL_4365
Panthothenate kinase.
       0.490
ACPL_4366
Hypothetical protein.
       0.490
cdh2
UDP-N-acetylglucosamine 4-epimerase; Nucleoside-diphosphate-sugar epimerases.
     
 0.427
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.