STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4368Hypothetical protein; Siderophore synthetase component. (487 aa)    
Predicted Functional Partners:
ACPL_4369
RhbF-like rhizobactin siderophore biosynthesis protein; Siderophore synthetase component.
 
  
 
0.993
lysA
Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
 0.880
ACPL_3053
Hypothetical protein.
  
     0.625
ACPL_4367
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; Predicted oxidoreductase.
       0.571
pvdA
L-ornithine N5-oxygenase; Lysine/ornithine N-monooxygenase.
  
  
 0.560
sidC
Lysine/ornithine N-monooxygenase.
  
  
 0.560
ACPL_2139
Hypothetical protein; Superfamily I DNA and RNA helicases and helicase subunits.
  
   
 0.493
ACPL_916
Endoglucanase H; Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.
  
     0.481
ACPL_7314
Histone-lysine N-methyltransferase MLL3.
  
     0.480
agmQ
Glutamyl endopeptidase; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
     0.479
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.