STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efeBPeroxidase ycdB; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family. (425 aa)    
Predicted Functional Partners:
efeO
ycdO-like uncharacterized protein; Predicted periplasmic lipoprotein involved in iron transport.
 
  
 0.985
efeU
Ferrous iron permease efeU; High-affinity Fe2+/Pb2+ permease.
 
  
 0.971
ACPL_5617
Uncharacterized protein, homolog of Cu resistance protein CopC.
 
  
 0.698
ACPL_2871
Putative copper export protein.
 
  
 0.684
ACPL_1190
Putative copper export protein.
 
  
 0.646
ACPL_3883
Uncharacterized iron-regulated membrane protein.
    0.555
hemG
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
     
 0.505
hemY
Protoporphyrinogen oxidase; Phytoene dehydrogenase and related proteins.
     
  0.499
tatA
Sec-independent protein translocase protein tatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
 
  
 0.489
ACPL_713
Hypothetical protein.
  
  
 0.444
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.