Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4439Hypothetical protein. (492 aa)    
Predicted Functional Partners:
ACPL_914
Lipopolysaccharide biosynthesis protein; ATPases involved in chromosome partitioning.
  
 
 0.966
ACPL_3099
Undecaprenyl-phosphate galactose phosphotransferase; Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.828
ACPL_7785
Undecaprenyl-phosphate galactose phosphotransferase; Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.828
rfbP
Undecaprenyl-phosphate galactose phosphotransferase; Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.828
ACPL_3137
Hypothetical protein.
   
 0.705
tagH
ABC transporter ATP-binding protein; ABC-type sugar transport systems, ATPase components.
  
  
 0.674
ACPL_5923
Hypothetical protein.
  
     0.611
ACPL_147
Hypothetical protein.
  
  
  0.590
ACPL_2248
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
 
     0.585
rfbA
ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
  
 0.581
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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