ACPL_4446 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_4446

Hypothetical protein. (453 aa)

Predicted Functional Partners:

ACPL_4445

0.961

ACPL_4447

0.951

ACPL_4448

0.734

ACPL_3770

0.709

ACPL_4449

0.634

ACPL_2056

0.618

ACPL_5510

0.616

ACPL_4565

0.497

ACPL_324

0.486

ACPL_967

0.483

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ACPL_2056	ACPL_3770	Predicted membrane protein.	Hypothetical protein; RTX toxins and related Ca2+-binding proteins.	0.451
ACPL_2056	ACPL_4445	Predicted membrane protein.	Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components.	0.414
ACPL_2056	ACPL_4446	Predicted membrane protein.	Hypothetical protein.	0.618
ACPL_2056	ACPL_4447	Predicted membrane protein.	Non-hemolytic phospholipase C.	0.615
ACPL_324	ACPL_4446	Ribose import ATP-binding protein rbsA; ABC-type sugar transport systems, ATPase components.	Hypothetical protein.	0.486
ACPL_3770	ACPL_2056	Hypothetical protein; RTX toxins and related Ca2+-binding proteins.	Predicted membrane protein.	0.451
ACPL_3770	ACPL_4445	Hypothetical protein; RTX toxins and related Ca2+-binding proteins.	Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components.	0.438
ACPL_3770	ACPL_4446	Hypothetical protein; RTX toxins and related Ca2+-binding proteins.	Hypothetical protein.	0.709
ACPL_3770	ACPL_4447	Hypothetical protein; RTX toxins and related Ca2+-binding proteins.	Non-hemolytic phospholipase C.	0.704
ACPL_3770	ACPL_5510	Hypothetical protein; RTX toxins and related Ca2+-binding proteins.	Uncharacterized protein.	0.510
ACPL_4445	ACPL_2056	Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components.	Predicted membrane protein.	0.414
ACPL_4445	ACPL_3770	Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components.	Hypothetical protein; RTX toxins and related Ca2+-binding proteins.	0.438
ACPL_4445	ACPL_4446	Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components.	Hypothetical protein.	0.961
ACPL_4445	ACPL_4447	Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components.	Non-hemolytic phospholipase C.	0.947
ACPL_4445	ACPL_4448	Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components.	Truncated hemoglobins.	0.696
ACPL_4445	ACPL_4449	Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components.	Enolase-phosphatase E1; Predicted phosphatase/phosphohexomutase.	0.634
ACPL_4445	ACPL_5510	Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components.	Uncharacterized protein.	0.438
ACPL_4446	ACPL_2056	Hypothetical protein.	Predicted membrane protein.	0.618
ACPL_4446	ACPL_324	Hypothetical protein.	Ribose import ATP-binding protein rbsA; ABC-type sugar transport systems, ATPase components.	0.486
ACPL_4446	ACPL_3770	Hypothetical protein.	Hypothetical protein; RTX toxins and related Ca2+-binding proteins.	0.709