STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACPL_4463Putative ubiquinone biosynthesis protein ubiB; Predicted unusual protein kinase. (654 aa)    
Predicted Functional Partners:
ACPL_4464
Methylase involved in ubiquinone/menaquinone biosynthesis.
     
 0.715
ACPL_4461
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.634
ACPL_4462
Phosphoglycerate mutase 1.
       0.634
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
  
  0.494
ACPL_4460
Hypothetical protein.
       0.468
tpm
Methyltransferase type 12; SAM-dependent methyltransferases.
  
 
 0.429
ACPL_6195
Polyketide synthase modules and related proteins.
  
 
 0.409
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.