Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4498Hypothetical protein. (139 aa)    
Predicted Functional Partners:
ACPL_1466
Uncharacterized protein conserved in bacteria.
     
 0.583
ACPL_1321
Hypothetical protein.
     
 0.574
ACPL_1467
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
    
 0.556
ACPL_346
Hypothetical protein.
     
 0.545
ACPL_4497
Hypothetical protein.
       0.512
gtfE
Glycosyl transferases, related to UDP-glucuronosyltransferase.
       0.459
ACPL_2874
Putative HTH-type transcriptional regulator.
    
 0.403
ACPL_3887
Helix-turn-helix domain-containing protein.
    
 0.403
ACPL_4775
Putative HTH-type transcriptional regulatory protein; Predicted transcriptional regulators.
    
 0.403
ACPL_6384
Helix-turn-helix domain-containing protein.
    
 0.403
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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