STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4519Cellulose-binding family II; Alpha-L-arabinofuranosidase. (682 aa)    
Predicted Functional Partners:
glcI
Glucan endo-1,3-beta-glucosidase; Uncharacterized protein conserved in bacteria.
 
   
 0.756
ACPL_3007
Hypothetical protein.
 
  
 0.659
ACPL_5019
Pectinesterase; Pectin methylesterase.
  
  
 0.643
ACPL_1499
Nephrocystin-3; FOG: TPR repeat.
  
     0.603
ACPL_2106
Nigrin b; O-Glycosyl hydrolase.
  
     0.594
ACPL_4132
Hypothetical protein.
  
     0.584
ACPL_400
Pectate lyase; Alpha-L-arabinofuranosidase.
 
 
 0.572
ACPL_6959
Signal peptidase I.
  
     0.572
ACPL_1496
Nephrocystin-3; FOG: TPR repeat.
  
     0.567
ACPL_6763
PHB depolymerase family esterase; Poly(3-hydroxybutyrate) depolymerase.
  
  
 0.564
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.