STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pelXPectate lyase/Amb allergen; Subtilisin-like serine proteases. (599 aa)    
Predicted Functional Partners:
ACPL_2701
Pectate lyase.
   
 0.926
ACPL_5719
Pectinesterase; Pectin methylesterase.
   
 0.815
ACPL_5020
Pectate lyase.
   
 0.814
ACPL_3007
Hypothetical protein.
 
  
 0.742
ACPL_3011
Hypothetical protein; Poly(3-hydroxybutyrate) depolymerase.
  
     0.717
ACPL_6174
Poly(3-hydroxybutyrate) depolymerase.
  
     0.681
ACPL_3008
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.675
celY
Exoglucanase-2; RTX toxins and related Ca2+-binding proteins.
 
   
 0.661
pel
Pectate lyase/Amb allergen; Pectate lyase.
 
   
 0.653
glcI
Glucan endo-1,3-beta-glucosidase; Uncharacterized protein conserved in bacteria.
  
     0.651
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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