Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dasB-2ABC-type sugar transport systems, permease components. (326 aa)    
Predicted Functional Partners:
dasC
ABC-type sugar transport system, permease component.
 
 0.995
msiK
Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
 0.988
ACPL_4619
yurO-like uncharacterized ABC transporter extracellular-binding protein; ABC-type sugar transport system, periplasmic component.
 
 0.987
msmK
Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
 0.985
ACPL_1942
Putative ABC transporter permease protein yurM; ABC-type sugar transport system, permease component.
 
 0.981
dasA
yurO-like Uncharacterized ABC transporter extracellular-binding protein; ABC-type sugar transport system, periplasmic component.
 
 0.964
malG-2
ABC-type maltose transport systems, permease component.
 
 0.953
dasB
ABC-type sugar transport systems, permease components.
  
  
 
0.916
ACPL_5386
ABC-type sugar transport system, permease component.
 
 0.904
yurM
Putative ABC transporter permease protein yurM; ABC-type sugar transport system, permease component.
 
  0.888
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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