ACPL_4660 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_4660

Putative lipoprotein; Uncharacterized protein containing LysM domain. (377 aa)

Predicted Functional Partners:

ACPL_4661

0.572

ACPL_6933

0.537

ACPL_6911

0.517

ACPL_1180

0.482

ACPL_3480

0.476

ACPL_6652

0.475

ACPL_826

0.455

ACPL_2007

0.445

ACPL_7514

0.444

ACPL_3004

0.442

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ACPL_1180	ACPL_3004	Rare lipoprotein A; Endoglucanase C-terminal domain/subunit and related proteins.	RNA polymerase, sigma-24 subunit, ECF subfamily; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.	0.435
ACPL_1180	ACPL_4660	Rare lipoprotein A; Endoglucanase C-terminal domain/subunit and related proteins.	Putative lipoprotein; Uncharacterized protein containing LysM domain.	0.482
ACPL_2007	ACPL_4660	Hypothetical protein.	Putative lipoprotein; Uncharacterized protein containing LysM domain.	0.445
ACPL_2007	ACPL_7514	Hypothetical protein.	Uncharacterized protein conserved in archaea.	0.670
ACPL_3004	ACPL_1180	RNA polymerase, sigma-24 subunit, ECF subfamily; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.	Rare lipoprotein A; Endoglucanase C-terminal domain/subunit and related proteins.	0.435
ACPL_3004	ACPL_4660	RNA polymerase, sigma-24 subunit, ECF subfamily; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.	Putative lipoprotein; Uncharacterized protein containing LysM domain.	0.442
ACPL_3004	ACPL_7514	RNA polymerase, sigma-24 subunit, ECF subfamily; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.	Uncharacterized protein conserved in archaea.	0.467
ACPL_3480	ACPL_4660	Guanine-specific ribonuclease N1 and T1.	Putative lipoprotein; Uncharacterized protein containing LysM domain.	0.476
ACPL_3480	ACPL_6652	Guanine-specific ribonuclease N1 and T1.	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.	0.456
ACPL_4660	ACPL_1180	Putative lipoprotein; Uncharacterized protein containing LysM domain.	Rare lipoprotein A; Endoglucanase C-terminal domain/subunit and related proteins.	0.482
ACPL_4660	ACPL_2007	Putative lipoprotein; Uncharacterized protein containing LysM domain.	Hypothetical protein.	0.445
ACPL_4660	ACPL_3004	Putative lipoprotein; Uncharacterized protein containing LysM domain.	RNA polymerase, sigma-24 subunit, ECF subfamily; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.	0.442
ACPL_4660	ACPL_3480	Putative lipoprotein; Uncharacterized protein containing LysM domain.	Guanine-specific ribonuclease N1 and T1.	0.476
ACPL_4660	ACPL_4661	Putative lipoprotein; Uncharacterized protein containing LysM domain.	Transcriptional regulators.	0.572
ACPL_4660	ACPL_6652	Putative lipoprotein; Uncharacterized protein containing LysM domain.	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.	0.475
ACPL_4660	ACPL_6911	Putative lipoprotein; Uncharacterized protein containing LysM domain.	Collagen alpha-4(VI) chain; Secreted and surface protein containing fasciclin-like repeats.	0.517
ACPL_4660	ACPL_6933	Putative lipoprotein; Uncharacterized protein containing LysM domain.	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Belongs to the sigma-70 factor family. ECF subfamily.	0.537
ACPL_4660	ACPL_7514	Putative lipoprotein; Uncharacterized protein containing LysM domain.	Uncharacterized protein conserved in archaea.	0.444
ACPL_4660	ACPL_826	Putative lipoprotein; Uncharacterized protein containing LysM domain.	Ribonuclease; Guanyl-specific ribonuclease Sa.	0.455
ACPL_4661	ACPL_4660	Transcriptional regulators.	Putative lipoprotein; Uncharacterized protein containing LysM domain.	0.572