STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4660Putative lipoprotein; Uncharacterized protein containing LysM domain. (377 aa)    
Predicted Functional Partners:
ACPL_4661
Transcriptional regulators.
       0.572
ACPL_6933
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.532
ACPL_6652
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.487
ACPL_1180
Rare lipoprotein A; Endoglucanase C-terminal domain/subunit and related proteins.
  
     0.482
ACPL_3480
Guanine-specific ribonuclease N1 and T1.
  
     0.476
ACPL_826
Ribonuclease; Guanyl-specific ribonuclease Sa.
  
     0.455
ACPL_2007
Hypothetical protein.
  
     0.445
ACPL_7514
Uncharacterized protein conserved in archaea.
  
     0.444
celD-2
Endoglucanase E-4; Cellobiohydrolase A (1,4-beta-cellobiosidase A).
  
 
   0.441
ACPL_3004
RNA polymerase, sigma-24 subunit, ECF subfamily; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.436
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.