STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4779Beta-agarase AgaB34; O-Glycosyl hydrolase. (165 aa)    
Predicted Functional Partners:
ACPL_6889
Arabinoxylan arabinofuranohydrolase; Predicted glycosyl hydrolase.
 
     0.673
ACPL_2582
Endoglucanase, putative; Uncharacterized protein related to plant photosystem II stability/assembly factor.
  
   
 0.619
ACPL_5494
Endo-1,4-beta-xylanase; Beta-1,4-xylanase.
  
     0.599
xlnA
Endo-1,4-beta-xylanase; Beta-1,4-xylanase.
  
     0.592
celY
Exoglucanase-2; RTX toxins and related Ca2+-binding proteins.
  
     0.581
cel1
Glycoside hydrolase family 9; Beta-glucanase/Beta-glucan synthetase.
  
     0.565
ACPL_2584
Uncharacterized protein conserved in bacteria.
  
     0.550
ACPL_7578
Beta-agarase AgaB34; Beta-glucanase/Beta-glucan synthetase.
 
     0.548
ACPL_5345
Glycoside hydrolase family protein; Cellobiohydrolase A (1,4-beta-cellobiosidase A); Belongs to the glycosyl hydrolase family 6.
  
     0.536
xysA
Endo-1,4-beta-xylanase; Beta-1,4-xylanase.
  
     0.531
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.