Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACPL_4787Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding. (182 aa)    
Predicted Functional Partners:
ACPL_4786
ywfM-like uncharacterized transporter; Permeases of the drug/metabolite transporter (DMT) superfamily.
 
     0.906
ACPL_4918
Hypothetical protein.
  
    0.457
ACPL_1790
Predicted membrane protein.
  
     0.453
ACPL_4583
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.448
ACPL_4484
Hypothetical protein.
  
     0.440
ACPL_139
Arylesterase; Lysophospholipase L1 and related esterases.
  
     0.439
ACPL_1450
Hypothetical protein.
  
    0.424
ACPL_2086
GDSL family lipase; Lysophospholipase L1 and related esterases.
  
     0.406
ACPL_2880
Uncharacterized protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
     0.404
ACPL_4328
Hypothetical protein.
  
    0.402
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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