Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4874Uncharacterized protein conserved in bacteria. (174 aa)    
Predicted Functional Partners:
ACPL_4875
Hypothetical protein.
       0.598
ACPL_7877
Uncharacterized protein.
  
     0.563
ACPL_4876
Hypothetical protein.
       0.443
ACPL_5742
Uncharacterized protein conserved in bacteria.
  
     0.443
ACPL_8303
Putative global transcription activator SNF2L2.
  
     0.430
ACPL_5421
Hypothetical protein.
 
     0.407
ACPL_6590
Hypothetical protein.
  
     0.401
ACPL_1445
Gene 77 protein.
  
     0.400
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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