STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tetR-13Tetracycline repressor protein class B from transposon Tn10; Transcriptional regulator. (239 aa)    
Predicted Functional Partners:
ACPL_4890
Putative multidrug resistance protein mdtD; Permeases of the major facilitator superfamily.
 
     0.636
tetR-2
Tetracycline repressor protein class H; Transcriptional regulator.
  
     0.630
ACPL_4888
Hypothetical protein.
       0.497
ACPL_2196
Transcriptional regulator, MarR family.
  
     0.475
ACPL_2017
Kynurenine 3-monooxygenase; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
  
     0.470
tetR-8
Tetracycline repressor protein class C; Transcriptional regulator.
  
     0.463
ACPL_7416
Predicted transcriptional regulators.
  
     0.451
ACPL_6818
Fatty acid metabolism regulator protein; Transcriptional regulator.
  
     0.427
ACPL_2503
Transcriptional regulator.
  
     0.406
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.