STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4924Putative oxidoreductase ordL; Glycine/D-amino acid oxidases (deaminating). (471 aa)    
Predicted Functional Partners:
ACPL_2470
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.812
potH
ABC-type spermidine/putrescine transport system, permease component I.
 
    0.732
potD
Spermidine/putrescine-binding periplasmic protein.
 
   
 0.721
potD-2
Spermidine/putrescine-binding periplasmic protein.
 
   
 0.717
ACPL_2383
Hypothetical protein; Predicted enzyme of the cupin superfamily.
 
    0.672
potI
ABC-type spermidine/putrescine transport system, permease component II.
 
     0.663
tetR-14
Tetracycline repressor protein class G; Transcriptional regulator.
 
     0.621
ACPL_2476
Transcriptional regulators.
 
   
 0.590
ACPL_2463
4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.552
baeN
Thiotemplate mechanism natural product synthetase; Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.513
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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