Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpa1Predicted carboxypeptidase. (914 aa)    
Predicted Functional Partners:
sucA
2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
    
  0.661
ACPL_770
Hypothetical protein.
  
     0.657
ACPL_6837
Coagulation factor 5/8 type domain protein; Rhs family protein.
  
     0.583
ACPL_1244
Zinc metalloprotease zmpB.
  
   
 0.579
ACPL_8145
HtpX-like probable protease; Zn-dependent protease with chaperone function.
  
   
 0.577
ACPL_5867
GCN5-related N-acetyltransferase; Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.558
ACPL_3796
Hypothetical protein; Predicted ATPase.
  
 
   0.555
ACPL_2574
Protein of unknown function DUF214; ABC-type antimicrobial peptide transport system, permease component.
  
     0.545
ACPL_2927
Hypothetical protein.
  
     0.510
ACPL_6245
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
  
    0.507
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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