Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_4985Transcriptional regulator, PadR-like family. (110 aa)    
Predicted Functional Partners:
ACPL_4984
Hypothetical protein.
       0.773
ACPL_4986
Putative oxidoreductase; Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
       0.529
ACPL_2833
Uncharacterized protein conserved in bacteria.
 
     0.475
ACPL_5133
Uncharacterized protein conserved in bacteria.
  
     0.439
ACPL_7433
Hypothetical protein.
  
     0.431
ACPL_1961
Hypothetical protein.
  
     0.430
ACPL_2829
Abortive infection protein; Predicted metal-dependent membrane protease.
  
    0.422
ACPL_6610
Aminoglycoside phosphotransferase.
  
     0.411
cdo1
Cysteine dioxygenase type 1; Predicted metal-dependent enzyme of the double-stranded beta helix superfamily.
  
     0.409
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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