Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACPL_5020Pectate lyase. (319 aa)    
Predicted Functional Partners:
ACPL_5019
Pectinesterase; Pectin methylesterase.
  
 0.985
ACPL_5719
Pectinesterase; Pectin methylesterase.
  
 0.967
ybhC
Putative pectinesterase; Pectin methylesterase.
 
  
 0.943
pel
Pectate lyase/Amb allergen; Pectate lyase.
 
  
 
0.929
ACPL_2701
Pectate lyase.
  
  
 
0.924
pelX
Pectate lyase/Amb allergen; Subtilisin-like serine proteases.
   
 0.814
ACPL_400
Pectate lyase; Alpha-L-arabinofuranosidase.
 
   
 0.765
ACPL_3003
Beta-1,4-xylanase.
  
     0.749
xlnB
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.747
xysA
Endo-1,4-beta-xylanase; Beta-1,4-xylanase.
  
   
 0.745
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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