Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dacCD-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (377 aa)    
Predicted Functional Partners:
dac
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
  0.969
ftsI
Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.954
pbpA
Peptidoglycan glycosyltransferase; Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.948
dac-2
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
     
 0.935
vanY
Peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin; D-alanyl-D-alanine carboxypeptidase.
     
 0.906
ACPL_278
D-alanyl-D-alanine carboxypeptidase.
     
 0.906
ACPL_578
Uncharacterized proteins, homologs of microcin C7 resistance protein MccF.
    
 0.597
ACPL_1303
Glycosyl transferase family protein; Membrane carboxypeptidase (penicillin-binding protein).
  
 
 0.573
ACPL_8116
Glycosyl transferase family protein; Membrane carboxypeptidase (penicillin-binding protein).
  
 
 0.573
ACPL_4159
Glycosyl transferase family protein; Membrane carboxypeptidase (penicillin-binding protein).
  
 
 0.572
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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